Created by the Bioinformatics Core of the Genomics Technology Support Facility at Michigan State University
| The Plant Specific Database Created by the Bioinformatics Core of the Genomics Technology Support Facility at Michigan State University | |||
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To explore the membership of Arabidopsis genes classified in this project to the various gene families defined by experts in the field follow the links below.
For example:
The Expansin gene family has been defined and contains 35 members. Of these 35, there are 25 genes with classification in our study. To explore the list of these 25 genes, their classification (e.g. all plant-specific in this case) and other annotation information click on the number 25 presented in the right column.
| Expert Gene Family (source: TAIR and Lipid Gene Database) | Number of genes with classification (Click the link to retrieve) |
|---|---|
| 14-3-3 proteins (13 members) | 9 |
| AAAP family (43 members) | 1 |
| ABC Superfamily (131 members) | 117 |
| ABC transporters (94 members) | 92 |
| ARIADNE gene family (16 members) | 11 |
| AS2 family (42 members) | 35 |
| Acyl-lipid metabolism (609 members) | 272 |
| Antiporters (70 members) | 19 |
| Aquaporin Families (35 members) | 24 |
| AtCBLs (Calcineurin B-like Calcium Sensor Proteins) (10 members) | 8 |
| AtCIPKs (25 members) | 25 |
| COBRA gene family (12 members) | 11 |
| Ca-binding proteins (251 members) | 90 |
| Calcium Dependent Protein Kinase (34 members) | 30 |
| Calmodulin-binding proteins (98 members) | 51 |
| Carbohydrate Esterase gene Families (98 members) | 40 |
| Chloroplast and Mitochondria gene families (50 members) | 29 |
| Class III peroxidase (73 members) | 19 |
| Core Cell Cycle genes (61 members) | 36 |
| Cytochrome P450 (256 members) | 125 |
| Cytochrome b5 (7 members) | 5 |
| Cytoskeleton (15 members) | 5 |
| Expansins (36 members) | 27 |
| Family of Arabidopsis genes related to Xyloglucan Fucosyltransferase1 (13 members) | 6 |
| Heat Shock transcription Factors (21 members) | 14 |
| Histidine Phosphotransfer Proteins (6 members) | 1 |
| Inorganic Solute Cotransporters (84 members) | 39 |
| Ion Channel Families (61 members) | 7 |
| Kinesins (61 members) | 19 |
| Lateral-organ boundaries gene family (43 members) | 35 |
| Lipid Metabolism gene Families (98 members) | 45 |
| MAP kinase family (20 members) | 19 |
| MAP kinase kinase family (10 members) | 10 |
| MAP kinase kinase kinase family (80 members) | 64 |
| MAP kinase kinase kinase kinase family (10 members) | 6 |
| MIP family (38 members) | 24 |
| MLO proteins (14 members) | 11 |
| MYB (132 members) | 11 |
| Membrane proteins (442 members) | 204 |
| Myosin (17 members) | 6 |
| NADPH P450 reductases (3 members) | 3 |
| Nodulin-like protein family (64 members) | 5 |
| Organic Solute Cotransporters (279 members) | 101 |
| Plant Cell Wall Biosynthesis Families (52 members) | 12 |
| Pollen Coat Proteome (11 members) | 5 |
| Polysaccharide Lyase gene Families (36 members) | 24 |
| Primary Pumps (AtPases) gene Families (83 members) | 55 |
| Protein synthesis factors (100 members) | 54 |
| RNA metabolism (1208 members) | 392 |
| Receptor kinase-like protein family (307 members) | 185 |
| SNARE and associated proteins (68 members) | 22 |
| U-box domain containing proteins (61 members) | 5 |
| WRKY transcription Factor Superfamily (74 members) | 44 |
| glycoside Hydrolase gene Families (386 members) | 72 |
| glycosyltransferase gene Families (360 members) | 44 |
| trehalose Biosynthesis gene Families (11 members) | 1 |
| type I MADS box (46 members) | 2 |