Created by the Bioinformatics Core of the Genomics Technology Support Facility at Michigan State University
| The Plant Specific Database Created by the Bioinformatics Core of the Genomics Technology Support Facility at Michigan State University | |||
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| Description | Short-Chain Dehydrogenase/Reductase Family Protein (Tropinone Reductase, Putative) |
| Comment | similar to tropinone reductase SP:P50165 from (Datura stramonium) |
| Classification | Common To All |
| TIGR ID | At2g29330 |
| GB | AC004561 |
| Gene Family based on BLASTCLUST | Family Size: 16 |
| Expert gene family (data source: TAIR) (Super Gene Family / Gene Family) | Membrane proteins / Putative tropinone reductase family |
| MW (TIGR) | 27661.44 |
| pI (TIGR) | 5.682 |
| EC Analysis (KEGG) | N/A |
| External Links | [TIGR] [MIPS] [TAIR] [SIGnAL] |
| Localization | Chloroplast Score | Mitochondrial Score | Secretory Score | Signal Length | Reliability Class |
| Not Defined | .018 | .173 | .316 | N/A | 4 |
| EST data | |||||||||
| TC | Total # ESTs | Seeds | Roots | Leaves | Flowers | Siliques | Seedlings | Cell Suspension | Mixed Tissues |
| TC166646 | 6 | 0 (0.00%) | 4 (0.02%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 1 (0.00%) |
| AFGC microarray data (Log2 of normalized ratio) | |||||||||
| Flower vs. Leaves | Stem vs. Ref. | Silique vs. Ref. | Root vs. Ref. | Flower vs. Ref. | Leaf vs. Ref. | ||||
| 0 | -.243 | -.7555 | -.8615 | ||||||
| Location | Expected # of AA | Expected # of AA in first 60 | Predicted Helices | Topology |
| soluble | 23.35 | 7.05 | 0 | o |
| Category Number | Description | Hitcode | P-value |
| 02.07 | Pentose-Phosphate Pathway | Ta0191 | 4e-64 |
| 40.03 | Cytoplasm | gi_16411261 | 1e-63 |
| 01.06.01.05 | Fatty Acid Biosynthesis | bg11535 | 1e-63 |
| 01.05.01 | C-Compound And Carbohydrate Utilization | bg10545 | 3e-63 |
| 14.04.01.01.01 | Sporulation And Other Development Of Resting Stages | bg10545 | 3e-63 |
| 01.05.01.01.09 | Aerobic Aromate Catabolism | IPI00030595 | 4e-63 |
| 01.05.01.01.11 | Anaerobic Aromate Catabolism | IPI00030595 | 4e-63 |
| 01.05.01.03.09 | Aromate Anabolism | IPI00030595 | 4e-63 |
| 01.20.17 | Biosynthesis Of Secondary Products Derived From Primary Amino Acids | IPI00030595 | 4e-63 |
| 01.01.01.11 | Biosynthesis Of The Cysteine-Aromatic Group | IPI00030595 | 4e-63 |
| 01.05 | C-Compound And Carbohydrate Metabolism | IPI00030595 | 4e-63 |
| 01.20.50 | Catabolism Of Secondary Metabolites | IPI00030595 | 4e-63 |
| 01.01.10.05 | Degradation Of Amino Acids Of The Cysteine-Aromatic Group | IPI00030595 | 4e-63 |
| 67.15 | Electron / Hydrogen Carrier | IPI00030595 | 4e-63 |
| 01.07 | Metabolism Of Vitamins, Cofactors, And Prosthetic Groups | IPI00030595 | 4e-63 |
| 40.19 | Peroxisome | IPI00030595 | 4e-63 |
| 20 | Systemic Regulation Of / Interaction With Environment | IPI00030595 | 4e-63 |
| Accession | Description | Type | Code | Evidence | Reference | Synonym |
| GO:0016491 | oxidoreductase | function | ISS | TIGR_Ath1:annotation | INTERPRO:IPR002198 |
| Accession | Description | Score |
| PF00106 | short chain dehydrogenase | 216.7 |
| Prediction | SA Probability | SP Probability | Cleavage Prob. | Position |
| Signal Peptide | 0.012 | 0.929 | 0.379 | 24 |