![]() | The Plant Specific Database Created by the Bioinformatics Core of the Genomics Technology Support Facility at Michigan State University | |||
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| Description | Peroxidase, Putative |
| Comment | identical to peroxidase ATP3a (Arabidopsis thaliana) gi|1546698|emb|CAA67340 |
| Classification | Plant Specific |
| TIGR ID | At5g64100 |
| GB | AB008266 |
| Gene Family based on BLASTCLUST | Family Size: 67 |
| Expert gene family (data source: TAIR) (Super Gene Family / Gene Family) | NA / Class III peroxidase |
| MW (TIGR) | 35678.78 |
| pI (TIGR) | 9.7314 |
| EC Analysis (KEGG) | peroxidase ATP3a [1.11.1.7] |
| External Links | [TIGR] [MIPS] [TAIR] [SIGnAL] |
| Localization | Chloroplast Score | Mitochondrial Score | Secretory Score | Signal Length | Reliability Class |
| Secretory | .011 | .117 | .511 | N/A | 4 |
| EST data | |||||||||
| TC | Total # ESTs | Seeds | Roots | Leaves | Flowers | Siliques | Seedlings | Cell Suspension | Mixed Tissues |
| TC149752 | 59 | 0 (0.00%) | 19 (0.09%) | 2 (0.05%) | 0 (0.00%) | 0 (0.00%) | 4 (0.06%) | 0 (0.00%) | 26 (0.06%) |
| AFGC microarray data (Log2 of normalized ratio) | |||||||||
| Flower vs. Leaves | Stem vs. Ref. | Silique vs. Ref. | Root vs. Ref. | Flower vs. Ref. | Leaf vs. Ref. | ||||
| 2.605 | -.107 | -2.824 | -3.158 | -3.1635 | -3.371 | ||||
| Location | Expected # of AA | Expected # of AA in first 60 | Predicted Helices | Topology |
| soluble | 19.59 | 19.3 | 1 | i7-26o |
| Category Number | Description | Hitcode | P-value |
| 11.07 | Detoxification | At4g08770 | 1e-122 |
| 11.05 | Disease, Virulence And Defense | At4g08770 | 1e-122 |
| Accession | Description | Type | Code | Evidence | Reference | Synonym |
| GO:0004601 | peroxidase | function | ISS | TIGR_Ath1:annotation | Pfam:PF00141 | |
| GO:0006804 | peroxidase reaction | process | ISS | TIGR_Ath1:annotation | Pfam:PF00141 |
| Accession | Description | Score |
| PF00141 | Peroxidase | 409.7 |
| Prediction | SA Probability | SP Probability | Cleavage Prob. | Position |
| Signal Peptide | 0.005 | 0.995 | 0.872 | 23 |