The Plant Specific Database
Created by the Bioinformatics Core of the
Genomics Technology Support Facility
at
Michigan State University
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Eukaryotes and Archea list (number of genes returned is:
141
)
Locus
Description
Subcellular Localization
(TargetP Prediction)
Membrane/Soluble
(TMHMM Prediction)
Automatic MIPS Functional
Assignment (Top Hit only)
# ESTs
At5g35590.1
20s Proteasome Alpha Subunit A1 (Paa1)
No Definition
Soluble
Transcriptional Activator
28
At2g05840.1
20s Proteasome Alpha Subunit A2 (Paa2)
No Definition
Soluble
Transcriptional Activator
26
At3g51260.1
20s Proteasome Alpha Subunit D (Pad1)
No Definition
Soluble
Cell Cycle
24
At5g66140.1
20s Proteasome Alpha Subunit D2 (Pad2)
No Definition
Soluble
Nucleic Acid Binding
At5g42790.1
20s Proteasome Alpha Subunit F1 (Paf1)
No Definition
Soluble
Ribosome Biogenesis
32
At1g47250.1
20s Proteasome Alpha Subunit F2 (Paf2)
No Definition
Soluble
Ribosome Biogenesis
11
At2g27020.1
20s Proteasome Alpha Subunit G (Pag1)
No Definition
Soluble
Nucleus
18
At3g60820.1
20s Proteasome Beta Subunit F1 (Pbf1)
No Definition
Soluble
Antigen Presentation / Processing
At3g60770.1
40s Ribosomal Protein S13 (Rps13a)
Mitochondria
Soluble
Cell Differentiation
39
At4g00100.1
40s Ribosomal Protein S13 (Rps13b)
Mitochondria
Soluble
Cell Differentiation
36
At2g04390.1
40s Ribosomal Protein S17 (Rps17a)
Mitochondria
Soluble
Directional Cell Growth (Morphogenesis)
16
At2g05220.1
40s Ribosomal Protein S17 (Rps17b)
Mitochondria
Soluble
Nucleic Acid Binding
14
At3g10610.1
40s Ribosomal Protein S17 (Rps17c)
Mitochondria
Soluble
Nucleic Acid Binding
14
At5g04800.1
40s Ribosomal Protein S17 (Rps17d)
Mitochondria
Soluble
Directional Cell Growth (Morphogenesis)
21
At3g02080.1
40s Ribosomal Protein S19 (Rps19a)
No Definition
Soluble
Ribosomal Proteins
26
At5g15520.1
40s Ribosomal Protein S19 (Rps19b)
No Definition
Soluble
Ribosome Biogenesis
7
At5g61170.1
40s Ribosomal Protein S19 (Rps19c)
No Definition
Soluble
Assembly Of Protein Complexes
3
At3g04920.1
40s Ribosomal Protein S24 (Rps24a)
Mitochondria
Soluble
Ribosome Biogenesis
20
At5g28060.1
40s Ribosomal Protein S24 (Rps24b)
Mitochondria
Soluble
Ribosome Biogenesis
15
At3g04840.1
40s Ribosomal Protein S3a (Rps3aa)
No Definition
Soluble
Ribosome Biogenesis
35
At4g34670.1
40s Ribosomal Protein S3a (Rps3ab)
No Definition
Soluble
Ribosome Biogenesis
54
At2g17360.1
40s Ribosomal Protein S4 (Rps4a)
Mitochondria
Soluble
Ribosomal Proteins
33
At5g07090.1
40s Ribosomal Protein S4 (Rps4b)
Mitochondria
Soluble
Ribosomal Proteins
57
At5g58420.1
40s Ribosomal Protein S4 (Rps4d)
Mitochondria
Soluble
Ribosomal Proteins
45
At5g59240.1
40s Ribosomal Protein S8 (Rps8b)
Chloroplast
Soluble
Ribosome Biogenesis
4
At2g40010.1
60s Acidic Ribosomal Protein P0 (Rpp0a)
Secretory
Soluble
Polynucleotide Degradation
1
At3g09200.1
60s Acidic Ribosomal Protein P0 (Rpp0b)
No Definition
Soluble
Polynucleotide Degradation
154
At3g11250.1
60s Acidic Ribosomal Protein P0 (Rpp0c)
No Definition
Soluble
Polynucleotide Degradation
16
At1g14320.1
60s Ribosomal Protein L10 (Rpl10a)/Wilm'S Tumor Suppressor Protein-Related
Mitochondria
Soluble
Translation
67
At1g26910.1
60s Ribosomal Protein L10 (Rpl10b)
Mitochondria
Soluble
Protein Binding
2
At1g66580.1
60s Ribosomal Protein L10 (Rpl10c)
Mitochondria
Soluble
Mitotic Cell Cycle And Cell Cycle Control
18
At1g08360.1
60s Ribosomal Protein L10a (Rpl10aa)
No Definition
Soluble
Ribosome Biogenesis
48
At4g16720.1
60s Ribosomal Protein L15 (Rpl15a)
Mitochondria
Soluble
Ribosome Biogenesis
35
At4g17390.1
60s Ribosomal Protein L15 (Rpl15b)
Mitochondria
Soluble
Ribosome Biogenesis
26
At1g02780.1
60s Ribosomal Protein L19 (Rpl19a)
No Definition
Soluble
Not Defined
93
At3g16780.1
60s Ribosomal Protein L19 (Rpl19b)
No Definition
Soluble
Ribosome Biogenesis
8
At4g02230.1
60s Ribosomal Protein L19 (Rpl19c)
Mitochondria
Soluble
Translation
19
At1g09590.1
60s Ribosomal Protein L21 (Rpl21a)
Mitochondria
Soluble
Ribosome Biogenesis
27
At1g09690.1
60s Ribosomal Protein L21 (Rpl21c)
Mitochondria
Soluble
Ribosome Biogenesis
30
At1g57660.1
60s Ribosomal Protein L21 (Rpl21e)
Mitochondria
Soluble
Ribosome Biogenesis
12
At1g57860.1
60s Ribosomal Protein L21 -Related
Mitochondria
Soluble
Ribosome Biogenesis
10
At2g39460.1
60s Ribosomal Protein L23a (Rpl23aa)
No Definition
Soluble
Ribosomal Proteins
22
At3g55280.1
60s Ribosomal Protein L23a (Rpl23ab)
No Definition
Soluble
Ribosome Biogenesis
21
At2g44860.1
60s Ribosomal Protein L24, Putative
No Definition
Soluble
Mitochondrial Transport
10
At3g49910.1
60s Ribosomal Protein L26 (Rpl26a)
Mitochondria
Soluble
Ribosome Biogenesis
22
At5g67510.1
60s Ribosomal Protein L26 (Rpl26b)
Chloroplast
Soluble
Assembly Of Protein Complexes
7
At4g18100.1
60s Ribosomal Protein L32 (Rpl32a)
Mitochondria
Soluble
Nucleic Acid Binding
27
At5g46430.1
60s Ribosomal Protein L32 (Rpl32b)
Mitochondria
Soluble
Ribosome Biogenesis
15
At1g07070.1
60s Ribosomal Protein L35a (Rpl35aa)
Mitochondria
Soluble
Subcellular Localisation
3
At1g74270.1
60s Ribosomal Protein L35a (Rpl35ac)
Mitochondria
Soluble
Ribosome Biogenesis
10
At3g23390.1
60s Ribosomal Protein L36a/L44 (Rpl36aa)
No Definition
Soluble
Ribosome Biogenesis
1
At4g14320.1
60s Ribosomal Protein L36a/L44 (Rpl36ab)
No Definition
Soluble
Ribosome Biogenesis
15
At1g15250.1
60s Ribosomal Protein L37 (Rpl37a)
Chloroplast
Soluble
Not Defined
6
At1g52300.1
60s Ribosomal Protein L37 (Rpl37b)
Chloroplast
Soluble
Not Defined
32
At3g16080.1
60s Ribosomal Protein L37 (Rpl37c)
Chloroplast
Soluble
Ribosome Biogenesis
10
At3g10950.1
60s Ribosomal Protein L37a (Rpl37ab)
Mitochondria
Soluble
Translation
1
At3g60245.1
60s Ribosomal Protein L37a (Rpl37ac)
No Definition
Soluble
Translation
25
At3g09630.1
60s Ribosomal Protein L4/L1 (Rpl4a)
No Definition
Soluble
Ribosomal Proteins
75
At5g02870.1
60s Ribosomal Protein L4/L1 (Rpl4d)
No Definition
Soluble
Ribosomal Proteins
70
At3g25520.1
60s Ribosomal Protein L5 (Rpl5a)
Mitochondria
Soluble
Protein Binding
51
At5g39740.1
60s Ribosomal Protein L5 (Rpl5b)
Mitochondria
Soluble
Protein Binding
At2g01250.1
60s Ribosomal Protein L7 (Rpl7b)
No Definition
Soluble
Ribosomal Proteins
31
At2g44120.1
60s Ribosomal Protein L7 (Rpl7c)
No Definition
Soluble
Translational Control
At2g44120.2
60s Ribosomal Protein L7 (Rpl7c)
No Definition
Soluble
Translational Control
At3g13580.1
60s Ribosomal Protein L7 (Rpl7d)
No Definition
Soluble
Ribosomal Proteins
9
At2g47610.1
60s Ribosomal Protein L7a (Rpl7aa)
No Definition
Soluble
Transcriptional Repressor
49
At3g62870.1
60s Ribosomal Protein L7a (Rpl7ab)
No Definition
Soluble
Ligand-Dependent Nuclear Receptors
60
At5g66130.1
Atrad17 (Dbj|Baa90479.1)
Chloroplast
Soluble
Fermentation Of Nitrogenous Compounds
At2g29680.1
Cdc6 Protein -Related
Chloroplast
Soluble
Dna Synthesis And Replication
2
At2g42120.1
Dna Polymerase Delta Small Subunit -Related
No Definition
Soluble
Other Nuclear Structures
1
At3g22320.1
Dna-Directed Rna Polymerase (Rna Polymerase), Putative
No Definition
Soluble
Mrna Transcription
17
At2g04630.1
Dna-Directed Rna Polymerase Ii Subunit -Related
No Definition
Soluble
Rrna Synthesis
4
At5g51940.1
Dna-Directed Rna Polymerase Ii Subunit-Related Protein
No Definition
Soluble
Rrna Synthesis
7
At4g07950.1
Dna-Directed Rna Polymerase Subunit -Related
No Definition
Soluble
Not Defined
8
At1g35550.1
Elongation Factor -Related
No Definition
Soluble
Translation
At3g26618.1
Eukaryotic Peptide Chain Release Factor Subunit 1 (Erf1)
Mitochondria
Soluble
Translation
11
At1g12920.1
Eukaryotic Peptide Chain Release Factor Subunit 1 -Related
No Definition
Soluble
Translation
16
At5g47880.1
Eukaryotic Release Factor 1 Homolog (Gb|Aaa91169.1)
No Definition
Soluble
Translation
24
At5g05470.1
Eukaryotic Translation Initiation Factor 2 Alpha Subunit-Related Protein
No Definition
Soluble
Translation
At3g07920.1
Eukaryotic Translation Initiation Factor 2 Beta Subunit (Eif-2-Beta) -Related
No Definition
Soluble
Ribosome Biogenesis
1
At1g36730.1
Eukaryotic Translation Initiation Factor 5 -Related
No Definition
Soluble
Ribosomal Proteins
37
At3g55620.1
Eukaryotic Translation Initiation Factor 6 (Eif-6) - Like Protein
Secretory
Soluble
Translation
21
At1g29630.1
Exonuclease -Related
No Definition
Soluble
Cell Differentiation
2
At1g01210.1
Expressed Protein
No Definition
Soluble
Mrna Synthesis
3
At1g07270.1
Expressed Protein
Chloroplast
Soluble
Dna Synthesis And Replication
2
At1g09150.1
Expressed Protein
No Definition
Soluble
Mitotic Cell Cycle And Cell Cycle Control
6
At1g34260.1
Expressed Protein
No Definition
Soluble
Protein Folding And Stabilization
2
At1g43860.1
Expressed Protein
Mitochondria
Soluble
Not Defined
10
At1g60170.1
Expressed Protein
No Definition
Soluble
Rrna Processing
26
At3g03010.1
Expressed Protein
Mitochondria
Soluble
Subcellular Localisation
1
At3g12990.1
Expressed Protein
No Definition
Soluble
Rrna Processing
6
At3g13230.1
Expressed Protein
No Definition
Soluble
Mitotic Cell Cycle And Cell Cycle Control
3
At3g14270.1
Expressed Protein
No Definition
Soluble
Other Intracellular Signal Transduction Activities
16
At3g26410.1
Expressed Protein
Secretory
Soluble
Dna Repair
7
At3g26680.1
Expressed Protein
No Definition
Soluble
Nucleic Acid Binding
5
At3g57000.1
Expressed Protein
No Definition
Soluble
Subcellular Localisation
9
At3g59630.1
Expressed Protein
No Definition
Soluble
Amino Acid Biosynthesis
7
At4g16265.1
Expressed Protein
No Definition
Soluble
Purine Nucleotide Metabolism
1
At4g33240.1
Expressed Protein
No Definition
Soluble
Protein Folding And Stabilization
21
At5g37340.1
Expressed Protein
No Definition
Soluble
Cell Cycle And Dna Processing
3
At5g57450.1
Expressed Protein
No Definition
Soluble
Gametogenesis
8
At5g62030.1
Expressed Protein
No Definition
Soluble
Amino Acid Biosynthesis
6
At5g52470.1
Fibrillarin 1 (Fib1) (Skip7)
No Definition
Soluble
Splicing
17
At4g25630.1
Fibrillarin 2 (Atfib2)
Mitochondria
Soluble
Splicing
23
At1g01880.1
Hypothetical Protein
Mitochondria
Soluble
Cell Differentiation
1
At1g77620.1
Hypothetical Protein
No Definition
Soluble
Nucleotide Binding
1
At4g10680.1
Hypothetical Protein
No Definition
Soluble
Not Defined
3
At2g14050.1
Minichromosome Maintenance (Mcm) Family
No Definition
Soluble
Dna Synthesis And Replication
1
At3g60500.1
Nucleolar Autoantigen - Like Protein
No Definition
Soluble
Subcellular Localisation
4
At1g56110.1
Nucleolar Protein Nop56, Putative
No Definition
Soluble
Rrna Processing
24
At3g12860.1
Nucleolar Protein Nop56, Putative
No Definition
Soluble
Mrna Transcription
2
At5g19690.1
Oligosaccharyl Transferase Stt3-Related Protein
No Definition
Soluble
Metabolism
22
At4g12620.1
Origin Recognition Complex Subunit 1 -Related Protein
Chloroplast
Soluble
Pheromone Response, Mating-Type Determination, Sex-Specific Proteins
4
At3g58390.1
Pelota-Related Protein
No Definition
Soluble
Cell Cycle And Dna Processing
1
At2g29570.1
Proliferating Cell Nuclear Antigen, Pcna -Related
No Definition
Soluble
Dna Recombination And Dna Repair
6
At1g07370.1
Proliferating Cellular Nuclear Antigen
No Definition
Soluble
Dna Recombination And Dna Repair
10
At3g60610.1
Pseudogene, Putative Pre-Mrna Processing Ribonucleoprotein
Secretory
Soluble
Nucleolus
2
At5g41150.1
Repair Endonuclease (Gb|Aaf01274.1)
No Definition
Soluble
Dna Repair
At4g14700.1
Replication Control Protein 1 Like
Chloroplast
Soluble
Nucleic Acid Binding
At4g12600.1
Ribosomal Protein L7ae Family
No Definition
Soluble
Ribosomal Proteins
15
At4g22380.1
Ribosomal Protein L7ae Family
No Definition
Soluble
Mitotic Cell Cycle And Cell Cycle Control
6
At5g08180.1
Ribosomal Protein L7ae Family
No Definition
Soluble
Transcriptional Repressor
9
At5g20160.1
Ribosomal Protein L7ae Family
No Definition
Soluble
Ribosomal Proteins
15
At1g06790.1
Rna Polymerase -Related
No Definition
Soluble
Dna Repair
4
At5g59180.1
Rna Polymerase Ii
Mitochondria
Soluble
Stress Response
5
At3g16980.1
Rna Polymerase Ii Subunit 14.5 Kd -Related
No Definition
Soluble
Mrna Transcription
At1g60620.1
Rna Polymerase Subunit
No Definition
Soluble
Transcriptional Control
7
At1g60850.1
Rna Polymerase Subunit
No Definition
Soluble
Transcriptional Control
At1g60850.2
Rna Polymerase Subunit
No Definition
Soluble
Transcriptional Control
At3g05060.1
Sar Dna-Binding Protein, Putative
No Definition
Soluble
Rrna Processing
12
At5g27140.1
Sar Dna-Binding Protein, Putative
Secretory
Soluble
Regulation Of Splicing
1
At2g43810.1
Small Nuclear Ribonucleo Protein Polypeptide F -Related
No Definition
Soluble
Not Defined
3
At2g41630.1
Transcription Factor Iib (Tfiib)
No Definition
Soluble
Transcriptional Control
12
At3g10330.1
Transcription Initiation Factor Iib (Tfiib)
No Definition
Soluble
Rrna Synthesis
10
At4g36650.1
Transcription Initiation Factor Like Protein
Mitochondria
Soluble
Transcriptional Activator
At3g13445.1
Transcription Initiation Factor Tfiid-1 (Tata Sequence-Binding Protein 1)
No Definition
Soluble
Transcriptional Activator
13
At1g55520.1
Transcription Initiation Factor Tfiid-2
No Definition
Soluble
Transcriptional Activator
14
At2g39820.1
Translation Initiation Factor -Related
No Definition
Soluble
Translation
1
At5g20920.1
Translation Initiation Factor Eif-2 Beta Chain - Like Protein
No Definition
Soluble
Initiation
19
At5g01940.1
Translation Initiation Factor Eif-2 Beta Chain-Related Protein
No Definition
Soluble
Translation
1
At5g22480.1
Zinc Finger Protein-Related
No Definition
Soluble
Transcriptional Control
2
