The Plant Specific Database
Created by the Bioinformatics Core of the
Genomics Technology Support Facility
at
Michigan State University
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list (number of genes returned is:
179
)
Locus
Description
Subcellular Localization
(TargetP Prediction)
Membrane/Soluble
(TMHMM Prediction)
Automatic MIPS Functional
Assignment (Top Hit only)
# ESTs
At4g31300.1
20s Proteasome Beta Subunit A (Pba1)
No Definition
Soluble
Proteasomal Degradation
25
At3g26340.1
20s Proteasome Beta Subunit E, Putative
No Definition
Soluble
Mitotic Cell Cycle And Cell Cycle Control
7
At1g13060.1
20s Proteasome Beta Subunit E1 (Pbe1)
No Definition
Soluble
Proteasomal Degradation
22
At1g76490.1
3-Hydroxy-3-Methylglutaryl-Coa Reductase 1 (Hmg1)
Chloroplast
Membrane
Metabolism
46
At2g17370.1
3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase 2 (Hmg-Coa Reductase 2) (Hmgr2)
No Definition
Soluble
Isoprenoid Biosynthesis
10
At5g65940.1
3-Hydroxyisobutyryl-Coenzyme A Hydrolase (Coa-Thioester Hydrolase) (Chy1)
No Definition
Soluble
Mitochondrion
6
At2g30650.1
3-Hydroxyisobutyryl-Coenzyme A Hydrolase (Coa-Thioester Hydrolase) (Chy1), Putative
No Definition
Soluble
Cell Differentiation
1
At2g30660.1
3-Hydroxyisobutyryl-Coenzyme A Hydrolase (Coa-Thioester Hydrolase) (Chy1), Putative
No Definition
Soluble
Mitochondrion
1
At1g06550.1
3-Hydroxyisobutyryl-Coenzyme A Hydrolase (Coa-Thioester Hydrolase) Family
No Definition
Soluble
Cell Differentiation
4
At4g13360.1
3-Hydroxyisobutyryl-Coenzyme A Hydrolase (Coa-Thioester Hydrolase) Family
No Definition
Soluble
Breakdown Of Lipids, Fatty Acids And Isoprenoids
At4g31810.1
3-Hydroxyisobutyryl-Coenzyme A Hydrolase (Coa-Thioester Hydrolase) Family
Mitochondria
Soluble
Mitochondrion
4
At2g36160.1
40s Ribosomal Protein S14 (Rps14a)
No Definition
Soluble
Ribosomal Proteins
4
At3g11510.1
40s Ribosomal Protein S14 (Rps14b)
No Definition
Soluble
Ribosomal Proteins
21
At3g52580.1
40s Ribosomal Protein S14 (Rps14c)
No Definition
Soluble
Ribosome Biogenesis
18
At2g09990.1
40s Ribosomal Protein S16 (Rps16a)
No Definition
Soluble
Assembly Of Protein Complexes
5
At3g04230.1
40s Ribosomal Protein S16 (Rps16b)
No Definition
Soluble
Translation
6
At5g18380.1
40s Ribosomal Protein S16 (Rps16c)
No Definition
Soluble
Ribosome Biogenesis
40
At2g42740.1
60s Ribosomal Protein L11 (Rpl11a)
No Definition
Soluble
Cell Differentiation
4
At3g58700.1
60s Ribosomal Protein L11 (Rpl11b)
No Definition
Soluble
Cell Differentiation
8
At4g18730.1
60s Ribosomal Protein L11 (Rpl11c)
No Definition
Soluble
Cell Differentiation
37
At5g45775.1
60s Ribosomal Protein L11 (Rpl11d)
No Definition
Soluble
Cell Differentiation
At5g45775.2
60s Ribosomal Protein L11 (Rpl11d)
No Definition
Soluble
Cell Differentiation
At5g40010.1
Aaa-Type Atpase Family
No Definition
Soluble
Rna Localisation
1
At1g36180.1
Acetyl-Coa Carboxylase -Related
No Definition
Soluble
Metabolism
2
At1g44820.1
Aminoacylase, Putative
Secretory
Soluble
Mitochondrion
10
At4g38220.1
Aminoacylase, Putative
Secretory
Soluble
Not Defined
5
At3g05350.1
Aminopeptidase -Related
No Definition
Soluble
Protein Processing (Proteolytic)
1
At4g36760.1
Aminopeptidase-Related Protein
No Definition
Soluble
Cytoplasmic And Nuclear Degradation
25
At3g54870.1
Armadillo-Repeat-Containing Kinesin-Related Protein
Chloroplast
Soluble
Protein Binding
2
At4g38070.1
Bhlh Protein Family
No Definition
Soluble
Not Defined
2
At1g01510.1
C-Terminal Binding Protein (Angustifolia)
No Definition
Soluble
Phosphate Metabolism
At4g01320.1
Caax Prenyl Protease -Related
Secretory
Soluble
Protein Folding And Stabilization
13
At1g20630.1
Catalase 1
No Definition
Soluble
Stress Response
31
At4g35090.1
Catalase 2
No Definition
Soluble
Not Defined
31
At1g20620.1
Catalase 3
No Definition
Soluble
Stress Response
635
At3g01085.1
Cdc2-Related Protein
Chloroplast
Soluble
Budding, Cell Polarity And Filament Formation
At5g01230.1
Cell Division - Like Protein
No Definition
Soluble
Nucleolus
1
At1g78770.1
Cell Division Cycle Protein Family
No Definition
Soluble
Mitotic Cell Cycle
5
At4g14760.1
Centromere Protein Homolog
No Definition
Soluble
Cytoplasm
4
At3g02530.1
Chaperonin, Putative
No Definition
Soluble
Mitotic Cell Cycle And Cell Cycle Control
28
At5g26360.1
Chaperonin, Putative
No Definition
Soluble
Cell Differentiation
38
At1g08830.1
Copper/Zinc Superoxidase Dismutase (Csd1)
No Definition
Soluble
Neuron
35
At2g28190.1
Copper/Zinc Superoxide Dismutase (Csd2)
Chloroplast
Soluble
Oxydative Stress Response
40
At5g18100.1
Copper/Zinc Superoxide Dismutase (Csd3)
No Definition
Soluble
Oxydative Stress Response
At3g57050.1
Cystathionine Beta-Lyase Precursor (Cbl)
Chloroplast
Soluble
Amino Acid Biosynthesis
17
At1g33320.1
Cystathionine Gamma-Synthase -Related
No Definition
Soluble
Biosynthesis Of The Aspartate Family
3
At3g01120.1
Cystathionine Gamma-Synthase -Related
Chloroplast
Soluble
Biosynthesis Of The Aspartate Family
69
At5g35970.1
Dna Helicase-Related
Chloroplast
Soluble
Dna Synthesis And Replication
6
At1g66730.1
Dna Ligase I -Related
Chloroplast
Soluble
Dna Synthesis And Replication
4
At5g57160.1
Dna Ligase Iv
No Definition
Soluble
Dna Synthesis And Replication
At5g67100.1
Dna Polymerase Alpha 1
No Definition
Soluble
Dna Synthesis And Replication
3
At5g63960.1
Dna Polymerase Iii Catalytic Subunit
Mitochondria
Soluble
Dna Synthesis And Replication
1
At1g03190.1
Dna Repair Protein -Related
No Definition
Soluble
Dna Repair
5
At1g11040.1
Dnaj Protein Family
No Definition
Soluble
Dna Synthesis And Replication
1
At2g35720.1
Dnaj Protein Family
No Definition
Soluble
Vessels
3
At5g43430.1
Electron Transfer Flavo Protein Beta-Subunit-Related
No Definition
Soluble
Breakdown Of Lipids, Fatty Acids And Isoprenoids
At2g43400.1
Electron Transfer Flavo Protein Ubiquinone Oxidoreductase -Related
Chloroplast
Soluble
Ionic Homeostasis
2
At1g50940.1
Electron Transport Flavo Protein -Related
Mitochondria
Soluble
Electron Transport And Membrane-Associated Energy Conservation
11
At2g38670.1
Ethanolamine-Phosphate Cytidylyltransferase (Phosphorylethanolamine Transferase/Ctp:Phosphoethanolamine Cytidylyltransferase), Putative
Secretory
Soluble
Metabolism
12
At1g03080.1
Expressed Protein
No Definition
Soluble
Cell Cycle
4
At1g03830.1
Expressed Protein
No Definition
Soluble
Cytoplasm
3
At1g05320.1
Expressed Protein
No Definition
Membrane
Cytoplasm
2
At1g06530.1
Expressed Protein
No Definition
Membrane
Subcellular Localisation
2
At1g10490.1
Expressed Protein
No Definition
Soluble
Other Intracellular Signal Transduction Activities
At1g22060.1
Expressed Protein
Mitochondria
Soluble
Cytoplasm
At1g55090.1
Expressed Protein
No Definition
Soluble
Osmotic And Salt Stress Response
5
At1g63300.1
Expressed Protein
Mitochondria
Soluble
Protein Modification
3
At1g64330.1
Expressed Protein
No Definition
Soluble
Cytoplasm
6
At1g67120.1
Expressed Protein
Secretory
Soluble
Transcription
4
At1g79830.1
Expressed Protein
No Definition
Soluble
Cytoplasm
5
At1g79950.1
Expressed Protein
Mitochondria
Soluble
Dna Repair
1
At2g38770.1
Expressed Protein
No Definition
Soluble
Other Trna-Transcription Activities
12
At2g44270.1
Expressed Protein
Mitochondria
Soluble
Cell Cycle
3
At3g05270.1
Expressed Protein
Mitochondria
Soluble
Cytoplasm
2
At3g05900.1
Expressed Protein
No Definition
Soluble
Cellular Communication/Signal Transduction Mechanism
7
At3g20970.1
Expressed Protein
Chloroplast
Soluble
Cell Differentiation
10
At3g22790.1
Expressed Protein
No Definition
Soluble
Mitotic Cell Cycle
At3g57940.1
Expressed Protein
No Definition
Soluble
Other Intracellular Signal Transduction Activities
3
At3g59980.1
Expressed Protein
Chloroplast
Soluble
Other Transmembrane Signal Transduction Mechanism
At3g61570.1
Expressed Protein
No Definition
Soluble
Not Defined
5
At4g02710.1
Expressed Protein
No Definition
Soluble
Protein Modification
At4g25730.1
Expressed Protein
No Definition
Soluble
Cell Cycle Checkpoints (Checkpoints Of Morphogenesis, Dna-Damage,-Replication, Mitotic Phase And Spindle)
8
At4g31570.1
Expressed Protein
No Definition
Soluble
Cell Cycle
3
At5g37350.1
Expressed Protein
No Definition
Soluble
Cell Differentiation
At5g38640.1
Expressed Protein
Mitochondria
Soluble
Initiation
At5g41140.1
Expressed Protein
Mitochondria
Soluble
Protein Modification
At5g44750.1
Expressed Protein
Chloroplast
Soluble
Dna Synthesis And Replication
2
At5g47770.1
Farnesyl Pyrophosphate Synthetase 1 (Fps1) (Farnesyl Diphosphate Synthase 1)
Mitochondria
Soluble
Lipid, Fatty-Acid And Isoprenoid Utilization
18
At4g17190.1
Farnesyl Pyrophosphate Synthetase 2 (Fps2) (Farnesyl Diphosphate Synthase 2)
No Definition
Soluble
Biosynthesis Of Derivatives Of Homoisopentenyl Pyrophosphate
13
At5g26675.1
Flap Endonuclease - Like Protein
No Definition
Soluble
Not Defined
1
At1g50480.1
Formate-Tetrahydrofolate Ligase (10-Formyltetrahydrofolate Synthetase)
No Definition
Soluble
Amino Acid Biosynthesis
At5g13830.1
Ftsj (Dbj|Baa83750.1)
No Definition
Soluble
Transcriptional Control
2
At3g06580.1
Galactokinase
No Definition
Soluble
Regulation Of C-Compound And Carbohydrate Utilization
16
At5g27330.1
Glutamic Acid-Rich Protein
Chloroplast
Soluble
Cytoplasm
1
At2g39630.1
Glycosyltransferase Family 2
Secretory
Soluble
Cell Differentiation
15
At1g52980.1
Gtp-Binding Protein -Related
No Definition
Soluble
Cell Differentiation
3
At1g80770.1
Gtp-Binding Protein -Related
Chloroplast
Soluble
Intracellular Signalling
6
At1g13210.1
Haloacid Dehalogenase-Like Hydrolase Family
Mitochondria
Membrane
C-Compound, Carbohydrate Transport
10
At1g54280.1
Haloacid Dehalogenase-Like Hydrolase Family
Mitochondria
Membrane
C-Compound, Carbohydrate Transport
1
At3g25610.1
Haloacid Dehalogenase-Like Hydrolase Family
Mitochondria
Membrane
C-Compound, Carbohydrate Transport
2
At4g11820.1
Hydroxymethylglutaryl-Coa Synthase
No Definition
Soluble
Isoprenoid Biosynthesis
25
At1g09720.1
Hypothetical Protein
Mitochondria
Soluble
Cytoplasm
1
At1g48970.1
Hypothetical Protein
Mitochondria
Soluble
Initiation
2
At1g49250.1
Hypothetical Protein
No Definition
Soluble
Dna Synthesis And Replication
3
At1g65780.1
Hypothetical Protein
No Definition
Soluble
Rna Transport
1
At1g67500.1
Hypothetical Protein
No Definition
Soluble
Dna Synthesis And Replication
1
At1g76170.1
Hypothetical Protein
No Definition
Soluble
Unclassified Proteins
1
At3g04820.1
Hypothetical Protein
Mitochondria
Soluble
Classification Not Yet Clear-Cut
1
At3g05130.1
Hypothetical Protein
No Definition
Soluble
Cytoplasm
1
At4g27595.1
Hypothetical Protein
Chloroplast
Soluble
Not Defined
At5g10880.1
Hypothetical Protein
No Definition
Soluble
Aminoacyl-Trna-Synthetases
1
At5g42880.1
Hypothetical Protein
No Definition
Soluble
Cytoplasm
1
At5g43350.1
Inorganic Phosphate Transporter (Pht1)
Secretory
Soluble
C-Compound, Carbohydrate Transport
15
At5g43370.1
Inorganic Phosphate Transporter (Pht2)
Secretory
Soluble
C-Compound, Carbohydrate Transport
4
At4g21270.1
Kinesin-Like Protein A (Kata)
Chloroplast
Soluble
Other Intracellular Transport Activities
4
At5g54670.1
Kinesin-Like Protein C (Katc)
Chloroplast
Soluble
Cytoskeleton-Dependent Transport
8
At1g73860.1
Kinesin-Related Protein
Chloroplast
Soluble
Not Defined
2
At3g10180.1
Kinesin-Related Protein
No Definition
Soluble
Tubuline Dependent Transport
1
At3g17360.1
Kinesin-Related Protein
No Definition
Soluble
Dna Synthesis And Replication
2
At3g19050.1
Kinesin-Related Protein
No Definition
Soluble
Control Of Cellular Organization
1
At2g25470.1
Leucine Rich Repeat Protein Family
No Definition
Membrane
Unspecified Signal Transduction
1
At1g25320.1
Leucine-Rich Repeat Transmembrane Protein Kinase, Putative
Secretory
Membrane
Unspecified Signal Transduction
7
At2g01210.1
Leucine-Rich Repeat Transmembrane Protein Kinase, Putative
Secretory
Soluble
Unspecified Signal Transduction
1
At2g23300.1
Leucine-Rich Repeat Transmembrane Protein Kinase, Putative
Secretory
Soluble
Intracellular Signalling
1
At4g31250.1
Leucine-Rich Repeat Transmembrane Protein Kinase, Putative
Secretory
Soluble
Transmembrane Signal Transduction
3
At5g67280.1
Leucine-Rich Repeat Transmembrane Protein Kinase, Putative
Secretory
Soluble
Intracellular Signalling
7
At1g08130.1
Ligase I -Related
Chloroplast
Soluble
Dna Synthesis And Replication
1
At2g12280.1
Ligase, Putative
No Definition
Soluble
Biosynthesis Of The Aspartate Family
1
At5g47040.1
Lon Protease Homolog 1 Precursor
Mitochondria
Soluble
Proteolytic Degradation
19
At5g26860.1
Lon Protease Homolog 2 Precursor
Chloroplast
Soluble
Nucleotide Binding
20
At3g05780.1
Lon Protease, Putative
Mitochondria
Soluble
Splicing
1
At3g05790.1
Lon Protease, Putative
Chloroplast
Soluble
Nucleotide Binding
1
At1g64660.1
Methionine/Cystathionine Gamma Lyase -Related
No Definition
Soluble
Amino Acid Biosynthesis
35
At2g40660.1
Methionyl-Trna Synthetase -Related
No Definition
Soluble
Translation
9
At2g38700.1
Mevalonate Diphosphate Decarboxylase
No Definition
Soluble
Cytoplasm
13
At3g54250.1
Mevalonate Diphosphate Decarboxylase, Putative
No Definition
Soluble
Tetracyclic And Pentacyclic Triterpenes (Cholesterin, Steroids And Hopanoids) Biosynthesis
1
At1g10210.1
Mitogen-Activated Protein Kinase (Mapk), Putative (Mpk1)
No Definition
Soluble
Phosphate Metabolism
8
At4g11330.1
Mitogen-Activated Protein Kinase (Mapk), Putative (Mpk5)
No Definition
Soluble
Transmembrane Signal Transduction
5
At3g62120.1
Multifunctional Aminoacyl-Trna Ligase-Related Protein
No Definition
Soluble
Translation
30
At1g04600.1
Myosin Heavy Chain -Related
No Definition
Soluble
Protein Targeting, Sorting And Translocation
At1g24560.1
Myosin Heavy Chain -Related
No Definition
Soluble
Protein Modification
3
At2g34730.1
Myosin Heavy Chain -Related
No Definition
Membrane
Cytoplasm
1
At1g47900.1
Mysoin-Related Protein
No Definition
Soluble
Cytoplasm
5
At5g15810.1
N2,N2-Dimethylguanine Trna Methyltransferase-Related Protein
Mitochondria
Soluble
Nucleus
2
At3g02320.1
N2,N2-Dimethylguanosine Trna Methyltransferase -Related
No Definition
Soluble
Nucleus
4
At1g77760.1
Nitrate Reductase 1 (Nr1)
No Definition
Soluble
Electron Transport And Membrane-Associated Energy Conservation
58
At1g13220.2
Nuclear Matrix Constituent Protein -Related
No Definition
Soluble
Protein Modification
3
At1g68790.1
Nuclear Matrix Constituent Protein 1 (Nmcp1) -Related
No Definition
Soluble
Protein Modification
6
At5g65770.1
Nuclear Matrix Constituent Protein 1 (Nmcp1)-Related
Chloroplast
Soluble
Not Defined
1
At1g67230.1
Nuclear Matrix Constituent Protein 1 -Related
Mitochondria
Soluble
Cytoplasm
10
At3g20660.1
Organic Cation Transporter Family
No Definition
Membrane
Vitamin/Cofactor Transporters
1
At2g47320.1
Peptidyl-Prolyl Cis-Trans Isomerase -Related
Mitochondria
Soluble
Protein Folding And Stabilization
11
At3g54700.1
Phosphate Transporter, Putative
No Definition
Soluble
Anion Transporters (Cl, So4, Po4, Etc.)
1
At5g36700.1
Phosphoglycolate Phosphatase, Putative
No Definition
Soluble
Nucleic Acid Binding
1
At5g36790.1
Phosphoglycolate Phosphatase, Putative
Chloroplast
Soluble
Metabolism
13
At5g47760.1
Phosphoglycolate Phosphatase, Putative
No Definition
Soluble
Cytoplasm
3
At5g04930.1
Phospholipid-Transporting Atpase 1 (Aminophospholipid Flippase 1) (Magnesium-Atpase)
No Definition
Membrane
C-Compound, Carbohydrate Transport
8
At2g06210.1
Phosphoprotein - Related
No Definition
Soluble
Metabolism
3
At5g60640.1
Protein Disulfide Isomerase Family
Secretory
Soluble
Protein Folding And Stabilization
20
At3g59410.1
Protein Kinase Like
No Definition
Soluble
Translation
2
At5g40942.1
Ribonucleoside-Diphosphate Reductase Small Chain -Related
No Definition
Soluble
Not Defined
1
At5g47010.1
Rna Helicase, Putative
No Definition
Soluble
Trna Processing
2
At4g15570.1
Sen1 Like Protein
No Definition
Soluble
Nucleic Acid Binding
4
At5g37140.1
Sen1-Related Protein
No Definition
Soluble
Rna Transport
1
At5g37160.1
Sen1-Related Protein
No Definition
Soluble
Trna Processing
1
At5g08160.1
Serine/Threonine Protein Kinase, Putative
No Definition
Soluble
Phosphate Metabolism
13
At5g09230.1
Sir2-Family Protein
Mitochondria
Soluble
Somatic / Mitotic Recombination
At5g07660.1
Smc-Related Protein
No Definition
Soluble
Mitotic Cell Cycle And Cell Cycle Control
1
At5g19530.1
Spermine Synthase (Acl5)
No Definition
Soluble
Biosynthesis Of Polyamines
38
At5g10090.1
Tetratricopeptide Repeat (Tpr)-Containing Protein
No Definition
Soluble
Protein Synthesis
1
At3g08710.1
Thioredoxin Family
No Definition
Soluble
Not Defined
1
At5g59440.1
Thymidylate Kinase - Like Protein
Mitochondria
Soluble
Mitochondrion
17
At5g55760.1
Transcription Regulator Sir2-Related Protein
No Definition
Soluble
Dna Recombination And Dna Repair
10
At4g18300.1
Translation Initiation Factor Family
No Definition
Soluble
C-Compound And Carbohydrate Metabolism
2
At5g65687.1
Transporter - Related
No Definition
Soluble
Not Defined
3
At2g33840.1
Tyrosyl-Trna Synthetase -Related
Chloroplast
Soluble
Not Defined
6
At2g30110.1
Ubiquitin Activating Enzyme 1 (Uba1)
No Definition
Soluble
Dna Synthesis And Replication
49
At5g06460.1
Ubiquitin Activating Enzyme 2 (Uba2)
No Definition
Soluble
Dna Synthesis And Replication
6
At3g58730.1
V-Atpase Subunit D (Vatpd)
Mitochondria
Soluble
Vacuolar Transport
33
